PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_FD6EC5EA9.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 388aa    MW: 40076.8 Da    PI: 5.9242
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_FD6EC5EA9.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.35.1e-12202247555
                            HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Traes_6AL_FD6EC5EA9.1 202 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 247
                            99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-17195257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-16199256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.61E-13201251No hitNo description
PfamPF000102.5E-9202247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13203252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MQPAGREMHG GGQGQDDFFE QMLSALPTAW AELGSVRPPW ELQAAGAPPH DGDPGFDESA  60
LLASRLRHNQ ISGGGGDDKP PPAMLPRHGL DGGGFLPLPL FTDRSREDLQ GANQALFDGF  120
GAAGMHAAGA AQPPFGQVSQ EPPPRPALAL FRVSSVALTE LCLLSPRASK AGSMPPPAAQ  180
GGAAAPPRQR QRARRGQATD PHSIAERLRR ERIAERMKAL QELVPNANKT DKASMLDEII  240
DYVKFLQLQV KVLSMSRLGG AAAVGPLVAG LSSESSGNGN GTSSSGDGNG DDDNGGSTLR  300
ATEQQVARLM EEDMGTAMQY LQGKGLCLMP ISLASVISSA TSSSLRSATR PAGNAGGPLH  360
EGGSPASPQL VNSMGTDGSR TIGDGSGQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206211RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3742250.0AK374225.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3058A22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452977.11e-128hypothetical protein SORBIDRAFT_04g035890
TrEMBLW5GBK00.0W5GBK0_WHEAT; Uncharacterized protein
STRINGSb04g035890.11e-127(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.12e-35LJRHL1-like 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]